Software List


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Parallel Particle Mesh Library (PPM)

version: 1.2_p1
released: November 12, 2010

PPM is a software layer between the Message Passing Interface (MPI) and codes for simulations of physical systems using hybrid particle-mesh methods. The library is based on a unifying formulation for the simulations of discrete and continuous systems using particles.

www.ppm-library.org



CMA-ES

version: 1.0
released: June 29, 2009

The Covariance Matrix Adaptation Evolution Strategy (CMA-ES) for Noisy and Global Optimization is an evolutionary (search) algorithm for difficult optimization problems.



CurveletUtils

version: 1.1
released: October 15, 2009

Matlab source code for a GUI implementing the edge detection method



LeSS

version: 1.0
released: July 3, 2009

LeSS (Leaping Stochastic Simulation) is a C++ software package for simulating chemical reactions.



TScratch (for Macintosh without MCR)

version: 1.0
released: June 29, 2009

TScratch is a software tool to automatically analyze wound healing assays (scratch assays). This version is a stand-alone application for Macintosh (Intel) OS X and requires you to have the Matlab Compiler Runtime (MCR) v7.8 engine installed (for example if you have MATLAB R2008a with Matlab Compiler).



TScratch (for Macintosh)

version: 1.0
released: May 29, 2009

TScratch is a software tool to automatically analyze wound healing assays (scratch assays). The installation procedure was developed by Will Ashby, Vanderbilt University. This version is a stand-alone application for Macintosh (Intel) OS X and includes the Matlab Compiler Runtime (MCR) v7.8 engine.



TScratch (for Windows without MCR)

version: 1.0
released: June 29, 2009

TScratch is a software tool to automatically analyze wound healing assays (scratch assays). This version is a stand-alone application for Windows and requires you to have the Matlab Compiler Runtime (MCR) v7.8 engine installed (for example if you have MATLAB R2008a with Matlab Compiler).



TScratch (for Windows)

version: 1.0
released: May 29, 2009

TScratch is a software tool to automatically analyze wound healing assays (scratch assays). This version is a stand-alone application for Windows and includes the Matlab Compiler Runtime (MCR) v7.8 engine.



TScratch (source code)

version: 1.0
released: May 18, 2010

TScratch is a software tool to automatically analyze wound healing assays (scratch assays) written using Matlab and the CurveLab library.



OpenOpal

version: 1.0
released: July 30, 2009

OpenOpal is an Open Source software environment for OPtimization And Learning, providing algorithms for automatic optimization, Design of Experiment, and Machine Learning.

openopal.origo.ethz.ch